Active Mining: Second International Workshop, AM 2003, by Shusaku Tsumoto, Takahira Yamaguchi, Masayuki Numao, Hiroshi

By Shusaku Tsumoto, Takahira Yamaguchi, Masayuki Numao, Hiroshi Motoda

This e-book constitutes the completely refereed postproceedings of the second one overseas Workshop on energetic Mining, AM 2003, held in Maebashi, Japan, in October 2003 as a satellite tv for pc workshop of ISMIS 2003.

The sixteen revised complete papers offered including 2 educational papers and an summary of the japanese energetic Mining venture went via 2 rounds of reviewing and development and have been chosen from initialy 38 submissions. The papers are prepared in topical sections on energetic details assortment, energetic facts mining, and energetic consumer response. Many present facets of energetic mining are addressed, starting from theoretical and methodological issues to algorithms and their functions in fields akin to bioinformatics, drugs, and existence technological know-how extra generally.

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Extra info for Active Mining: Second International Workshop, AM 2003, Maebashi, Japan, October 28, 2003. Revised Selected Papers

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Maxi,j F [i][j]). Liao and Noble proposed a simple method to derive a feature vector using the SW-score [23]. For two sequences s and s , let sw(s, s ) denote the SW-score between s and s . Let S = {s1 , . . , sn } be a set of sequences used as training data, where some sequences are used as positive examples and the others as negative examples. For each sequence s (s may not be in S), we define a feature vector ΦSW (s) by ΦSW (s) = (sw(s, si ))si ∈S . 24 T. Akutsu Then, the kernel is simply defined as ΦSW (s) · ΦSW (s ).

USA, 89:10915-10919, 1992. 12. , Akutsu, T. , Optimizing substitution matrices by separating score distributions, Bioinformatics, 20:863-873, 2004. 13. , Diekhans, M. , A discriminative framework for detecting remote protein homologies, Journal of Computational Biology, 7:95-114, 2000. 14. , Qian, B. and Goldstein, R. , Optimization of a new score function for the detection of remote homologs, Proteins: Structure, Function, and Genetics, 41:498-503, 2000. 15. , Karplus, K. , Classifying G-protein coupled receptors with support vector machines, Bioinformatics, 18:147-159, 2002.

1 What Is Indexing in General ? According to the AFNOR standard indexing is: Definition: Describing and characterising a document by the representation of the concepts contained in the document, and recording the concepts in some organised file, which can be easily accessed. , queries are handled by these files. This definition concerns textual documents, it must be generalised. For this generalisation, we will introduce later the notion of descriptors. First let’s try to define indexing in its general accceptation, without the context of any computer based process.

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